PyMood BLAST Output Other Files all_hits Files

Files with the extension .all_hits contain 14 columns with the results from BLAST output, and can be open in a spreadsheet editor. An example of the file name would be:
worm_vs_fly.blastp.matrix.all_hits

The description of the columns:

     A. unique identifier for the query gene
     B. unique identifiers of all BLAST hits above the cutoff of the 'Expect value'
     C. normalized expectation values for all hits above the cutoff of the 'Expect value'
     D. score (bits)
     E. percentage of identity between overlapping regions
     F. number of identical letters in the overlap
     G. length of the overlap
     H. order number of the hit for every query gene
     I. assigns number 1 to the every primary alignment*, assigns numbers 2, 3, 4, etc. to the alternative alignments**, if any
     J. indicates if the alignment is primary, 'PRM' or alternative, 'ALT'
     K. first position of the query sequence in the alignment
     L. last position of the query sequence in the alignment
     M. first position of the target sequence in the alignment
     N. last position of the target sequence in the alignment

* the alignment is primary when it is the best scored alignment between the query sequence and the particular target sequence
** the alignment is alternative when it is not the best scored alignment between the query sequence and the particular target sequence